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Complex Systems Software

• Cafun http://www.cafun.de
  A local copy is at http://www.itee.uq.edu.au/~complexity/software/cafunsimulator2.0.zip

Neural Network Software

• http://sigmapi.sourceforge.net/download.html
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Other

• Cell lineage analysis: Ales http://mbi.dkfz-heidelberg.de/projects/cellsim/ales/index.html
  Screenshot http://mbi.dkfz-heidelberg.de/projects/cellsim/ales/ales_main.png
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