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Thinking Systems
References
ERA journal rankings
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Rank
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Journal
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A*
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IEEE Transactions on Robotics
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A*
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International Journal of Robotics Research
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A*
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Journal of Experimental Psychology: Animal
Behavior Processes
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A*
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Journal of Neuroscience
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A*
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Journal of Theoretical Biology
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A |
Journal of Neurophysiology |
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A
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NeuroImage
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Robotics and Autonomous Systems |
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B |
Australian Journal of Intelligent Information Processing Systems |
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B
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Hippocampus
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B |
IEEE Robotics and Automation magazine
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ERA conference rankings
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Conference
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B
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Australasian Conference on Robotics and
Automation
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Index
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Oliver Baumann
Oliver Baumann
Oliver Baumann
Oliver Baumann and Edgar Chan
Allen Cheung
Allen Cheung
Allen Cheung
Allen Cheung
Allen Cheung
Allen Cheung
Michael Milford
Michael Milford
Michael Milford
Michael Milford
Michael Milford
Christopher Nolan
Peter Stratton
Peter Stratton
Peter Stratton
Peter Stratton
Peter Stratton
Janet Wiles
F Windels, JW Crane, P Sah
Gordon Wyeth
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Medial Parietal Cortex Encodes Perceived Heading Direction in Humans
Oliver Baumann and Jason B.
Mattingley,
Queensland Brain Institute and School of Psychology, The University of
Queensland
ABSTRACT
The ability to encode and update representations of heading
direction is crucial for successful navigation. In rats, head-direction cells
located within the limbic system alter their firing rate in accordance with
the animal’s current heading. To date, however, the neural structures that
underlie an allocentric or viewpoint-independent sense of direction in humans
remain unknown. Here we used functional magnetic resonance imaging (fMRI) to
measure neural adaptation to distinctive landmarks associated with one of four
heading directions in a virtual environment. Our experiment consisted of two
phases: a “learning phase,” in which participants actively navigated the
virtual maze; and a “test phase,” in which participants viewed pairs of images
from the maze while undergoing fMRI. We found that activity within the medial
parietal cortex—specifically, Brodmann area 31—was modulated by learned
heading, suggesting that this region contains neural populations involved in
the encoding and retrieval of allocentric heading information in humans. These
results are consistent with clinical case reports of patients with acquired
lesions of medial posterior brain regions, who exhibit deficits in forming and
recalling links between landmarks and directional information. Our findings
also help to explain why navigation disturbances are commonly observed in
patients with Alzheimer’s disease, whose pathology typically includes the
cortical region we have identified as being crucial for maintaining
representations of heading direction.
Reference
Baumann O. & Mattingley J.B. Medial Parietal Cortex Encodes
Perceived Heading Direction in Humans. The Journal of Neuroscience, September
29, 2010 • 30(39):12897–12901 • 12897
PDF
(692 Kb)
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Fig 1. Schematics of the virtual environment and spatial
judgment task used to examine the representation of allocentric heading.

Fig 2. Mean values,
expressed as a percentage of optimal efficiency, for spatial and temporal behavioral measures.

Fig 3. Mean BOLD activity for the comparison of novel heading > repeated
heading.
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Perceptual scaling of voice
identity: common dimensions for different vowels and speakers
Oliver Baumann, Pascal Belin*
,
Queensland Brain Institute,
The University of Queensland * University of Glasgow
ABSTRACT
The aims of our study were: (1) to determine if the
acoustical parameters used by normal subjects to discriminate between
different speakers vary when comparisons are made between pairs of two of the
same or different vowels, and if they are different for male and female
voices; (2) to ask whether individual voices can reasonably be represented as
points in a low-dimensional perceptual space such that similarly sounding
voices are located close to one another. Subjects were presented with pairs of
voices from 16 male and 16 female speakers uttering the three French vowels
‘‘a’’, ‘‘i’’ and ‘‘u’’ and asked to give speaker similarity judgments.
Multidimensional analyses of the similarity matrices were performed separately
for male and female voices and for three types of comparisons: same vowels,
different vowels and overall average. The resulting dimensions were then
interpreted a posteriori in terms of relevant acoustical measures. For both
male and female voices, a two-dimensional perceptual space was found to be
most appropriate, with axes largely corresponding to contributions of the
larynx (pitch) and supra-laryngeal vocal tract (formants), mirroring the two
largely independent components of source and filter in voice production. These
perceptual spaces of male and female voices and their corresponding voice
samples are available at: http://vnl.psy.gla.ac.uk section Resources.
Reference
Baumann O. & Belin P. Perceptual scaling of voice identity:
common dimensions for different vowels and speakers. Psychological Research
74: 110-120 (2010)
PDF (200K)
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Fig 1. The two-dimensional voice space: a spatial model derived with the
ALSCAL procedure from dissimilarity ratings on 16 male voices by 10 subjects
(averaged over all types of comparisons and vowels).

Fig 2. The two-dimensional voice space: a spatial model derived with the
ALSCAL procedure from dissimilarity ratings on 16 female voices by 10 subjects
(averaged over all types of comparisons and vowels).
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Scaling of Neural Responses to Visual and Auditory Motion in the Human
Cerebellum
Oliver Baumann and Jason B.
Mattingley,
Queensland Brain Institute and School of Psychology, The University of Queensland
ABSTRACT
The human cerebellum contains approximately half of all the
neurons within the cerebrum, yet most experimental work in human neuroscience
over the last century has focused exclusively on the structure and functions
of the forebrain. The cerebellum has an undisputed role in a range of motor
functions (Thach et al., 1992), but its potential contributions to sensory and
cognitive processes are widely debated (Stoodley and Schmahmann, 2009). Here
we used functional magnetic resonance imaging to test the hypothesis that the
human cerebellum is involved in the acquisition of auditory and visual sensory
data. We monitored neural activity within the cerebellum while participants
engaged in a task that required them to discriminate the direction of a visual
or auditory motion signal in noise. We identified a distinct set of cerebellar
regions that were differentially activated for visual stimuli (vermal lobule
VI and right-hemispheric lobule X) and auditory stimuli (right-hemispheric
lobules VIIIA and VIIIB and hemispheric lobule VI bilaterally). In addition,
we identified a region in left crus I in which activity correlated
significantly with increases in the perceptual demands of the task (i.e., with
decreasing signal strength), for both auditory and visual stimuli. Our results
support suggestions of a role for the cerebellum in the processing of auditory
and visual motion and suggest that parts of cerebellar cortex are concerned
with tracking movements of objects around the animal, rather than with
controlling movements of the animal itself (Paulin, 1993).
Reference
Baumann O. & Mattingley J.B. Scaling of neural responses to
visual and auditory motion in the human cerebellum. The Journal of
Neuroscience 30: 4489-4495 (2010a)
PDF (466K)
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Fig 1. Human cerebellar anatomy shown in sagittal and coronal planes. The
locations of anatomical regions (nomenclature according to Schmahmann et al.,
2000) were derived using the probabilistic atlas of the cerebellum by
Diedrichsen et al. (2009).
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Oliver Baumann, Edgar Chan, Jason B.
Mattingley,
The University of Queensland
ABSTRACT
Several cortical and subcortical circuits have been
implicated in object location memory and navigation. Uncertainty remains,
however, about which neural circuits are involved in the distinct processes of
encoding and retrieval during active navigation through three-dimensional
space. We used functional magnetic resonance imaging (fMRI) to measure neural
responses as participants learned the location of a single target object
relative to a small set of landmarks. Following a delay, the target was
removed and participants were required to navigate back to its original
position. The relative and absolute locations of landmarks and the target
object were changed on every trial, so that participants had to learn a novel
arrangement for each spatial scene. At encoding, greater activity within the
right hippocampus and the parahippocampal gyrus bilaterally predicted more
accurate navigation to the hidden target object in the retrieval phase. By
contrast, during the retrieval phase, more accurate performance was associated
with increased activity in the left hippocampus and the striatum bilaterally.
Dividing participants into good and poor navigators, based upon behavioural
performance, revealed greater striatal activity in good navigators during
retrieval, perhaps reflecting superior procedural learning in these
individuals. By contrast, the poor navigators showed stronger left hippocampal
activity, suggesting reliance on a less effective verbal or symbolic code by
this group. Our findings suggest separate neural substrates for the encoding
and retrieval stages of object location memory during active navigation, which
are further modulated by participants' overall navigational ability.
Reference
O Baumann, E Chan, J B Mattingley (2010). Dissociable
neural circuits for encoding and retrieval of object locations during active
navigation in humans NeuroImage 49 2816–2825
PDF (1,035K)
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Fig 1. Schematic of the
virtual environment used in the navigation task. (a) Example display of the
virtual environment. (b) Sequence of events in a typical experimental trial.

Fig 2. Three-dimensional rendered MR images
showing mean BOLD activity from the whole-brain analysis of experimental minus
baseline conditions. Red represents activity during the encoding phase; green
represents activity during the retrieval phase; yellow indicates overlaps.
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The Information Content of Panoramic Images I: The Rotational Errors and the
Similarity of Views in Rectangular Experimental Arenas
Wolfgang Stürzl, Allen Cheung, and Jochen
Zeil, The Australian National University; Ken Cheng, Macquarie University
ABSTRACT
Animals relocating a target corner in a rectangular space
often make rotational errors searching not only at the target corner but also
at the diagonally opposite corner. The authors tested whether view-based
navigation can explain rotational errors by recording panoramic
snapshots at regularly spaced locations in a rectangular box. The authors
calculated the global image difference between the image at each location and
the image recorded at a target location in 1 of the corners, thus creating a
2-dimensional map of image differences. The authors found the most pronounced
minima of image differences at the target corner and the diagonally opposite
corner— conditions favouring rotational errors. The authors confirmed these
results in virtual reality simulations and showed that the relative salience
of different visual cues determines whether image differences are dominated by
geometry or by features. The geometry of space is thus implicitly
contained in panoramic images and does not require explicit computation by a
dedicated module. A testable prediction is that animals making rotational
errors in rectangular spaces are guided by remembered views.
Reference
W Stürzl, A Cheung, J Zeil, K Cheng (2008). The
Information Content of Panoramic Images I: The Rotational Errors and the
Similarity of Views in Rectangular Experimental Arenas. Journal of
Experimental Psychology: Animal Behavior Processes 2008, Vol. 34, No. 1, 1–14
PDF (2,596K)
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Fig 1. The image difference
function (IDF) in a box with four black walls without (on the left)
and with distinct corner features (on the right). (A) Panoramic
views of the box. The target location is marked with a black circle
and the condition of the box walls is shown in the color of the frame. (B and C). (D) Difference functions over the
horizontal and vertical transects. (E) Local image differences are determined
only for the 8 neighboring locations. (F) Local image differences are
determined for 24 neighboring locations.
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The
Information Content of Panoramic Images II: View-Based Navigation in
Nonrectangular Experimental Arenas
Allen Cheung, Wolfgang Stürzl, and Jochen
Zeil, The Australian National University; Ken Cheng, Macquarie University.
ABSTRACT
Two recent studies testing navigation of rats in swimming pools have
posed problems for any account of the use of purely geometric properties of
space in navigation (M. Graham, M. A. Good, A. McGregor, & J. M. Pearce, 2006;
J. M. Pearce, M. A. Good, P. M. Jones, & A. McGregor, 2004). The authors
simulated 1 experiment from each study in a virtual reality environment to
test whether experimental results could be explained by view-based navigation.
The authors recorded a reference image at the target location and then
determined global panoramic image differences between this image and images
taken at regularly spaced locations throughout the arena. A formal model, in
which an agent attempts to minimize image differences between the reference
image and current views, generated trajectories that could be compared with
the search performance of rats. For both experiments, this model mimics many
aspects of rat behavior. View-based navigation provides a sufficient and
parsimonious explanation for a range of navigational behaviors of rats under
these experimental conditions.
Reference
A Cheung,
W Stürzl, J Zeil, K Cheng.(2008) The Information Content of Panoramic Images
II: View-Based Navigation in Nonrectangular Experimental Arenas. Journal of
Experimental Psychology: Animal Behavior Processes 2008, Vol. 34, No. 1, 15–30
PDF (1,362K)
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Fig 1. Rats were trained to find a hidden platform close to
a corner of a rectangular swimming pool (A). The rats were then tested in a
kite-shaped pool (B). (C)The three-dimensional representation of the image
difference function (IDF). (D)The two-dimensional representation. (E) Local
transects through the local minima of the IDF. (F) The local slopes of the
IDF.

Fig 2. Comparison of rat first-choice behavior with
simulation results.
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From Behaviour to Brain Dynamics
Allen Cheung, Queensland Brain Institute
ABSTRACT
It is well accepted that medium to long range navigation
requires the use of an external directional reference i.e. a compass. Cheung
et al (2007) recently demonstrated through theory and simulation the
quantitative significance of the compass. It was shown that navigating agents
using and not using a compass could be differentiated on the basis of the
population behaviour. In the current work, theory and simulation results will
be presented on ways to characterize individual paths on the basis of whether
the system was using an external directional reference. Thus it is
demonstrated that important information concerning the neural input used by a
navigating animal may be inferred probabilistically from its behaviour.
Reference
M Marinaro, S Scarpetta, and Y Yamaguchi (Eds.):
Dynamic Brain, LNCS 5286, pp. 91–95, 2008. łc Springer-Verlag Berlin
Heidelberg 2008
PDF (341K)
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Fig 1. (A) Graphical example of an unknown mixture of
simulated idiothetic and allothetic directed walks. (B) Set of 30 paths of
20 steps, the decision function (Eqn 6) made the correct decision in 28 out
of 30 paths.

Fig 2. Test
performance of the decision function using simulated IDWs and ADWs.
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Animal
Navigation: General Properties of Directed Walks
Allen Cheung and Mandyam V. Srinivasan, The University of Queensland;
Shaowu Zhang, University of Canberra; Christian Stricker, Australian National
University.
ABSTRACT
The ability to locomote is a defining characteristic of all animals.
Yet, all but the most trivial forms of navigation are poorly understood. Here
we report and discuss the analytical results of an in-depth study of a simple
navigation problem. In principle, there are two strategies for navigating a
straight course. One is to use an external directional reference and to
continually reorient with reference to it. The other is to monitor body
rotations from internal sensory information only. We showed previously that,
at least for simple representations of locomotion, the first strategy will
enable an animal or mobile agent to move arbitrarily far away from its
starting point, but the second strategy will not do so, even after an infinite
number of steps. This paper extends and generalizes the earlier results by
demonstrating that these findings are true even when a very general model of
locomotion is used. In this general model, error components within individual
steps are not independent, and directional errors may be biased. In the
absence of a compass, the expected path of a directed walk in general
approximates a logarithmic spiral. Some examples are given to illustrate
potential applications of the quantitative results derived here. Motivated by
the analytical results developed in this work, a nomenclature for directed
walks is proposed and discussed. Issues related to path integration in mammals
and robots, and measuring the curvature of a noisy path are also addressed
using directed walk theory.
Published Online: 10 September 2008
Reference
A Cheung, M V Srinivasan, S Zhang, C Stricker (2008)
Animal Navigation: General Properties of Directed Walks. Biological
Cybernetics (2008) 99:197–217 DOI 10.1007/s00422-008-0251-z
PDF (610K)
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Fig 1. Diagrammatic representation of a general elementary
step during an allothetic directed walk (a), and an idiothetic directed walk
(b).

Fig 2. Comparison of probability density functions
following a 500 step directed walk in the presence and absence of a compass.
(b) Using a compass. (c) Without a compass.
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Matthew A. Garratt, University of New
South Wales; Allen Cheung, The University of Queensland
ABSTRACT
Autonomous navigation of a flying vehicle in a cluttered
environment has been simulated to demonstrate novel yet simple techniques for
avoiding obstacles using optic flow and image loom signals whilst successfully
navigating a vehicle towards a goal. The simulation makes use of simulated
flow fields calculated on cameras looking downwards, forwards, rearwards and
sidewards. This computation could be carried out using a single processor
networked with multiple remote cameras or using separate optic flow sensors
oriented in each direction.
Reference
M Garratt, A Cheung (2009)
Obstacle Avoidance in Cluttered Environments using Optic Flow. Australasian
Conference on Robotics and Automation (ACRA), December 2-4, 2009, Sydney.
PDF (1,719K)
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Fig 1. Trajectory of helicopter in horizontal plane within
an 8m×16m arena for (a) heading aligned with longer walls and (b) offset by
22.5˚ from the longer walls.
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Robert J. Vickerstaff, University of
Canterbury; Allen Cheung, The University of Queensland
ABSTRACT
Path integration is a navigation strategy widely
observed in nature where an animal maintains a running estimate, called the
home vector, of its location during an excursion. Evidence suggests it is both
ancient and ubiquitous in nature, and has been studied for over a century. In
that time, canonical and neural network models have flourished, based on a
wide range of assumptions, justifications and supporting data. Despite the
importance of the phenomenon, consensus and unifying principles appear
lacking. A fundamental issue is the neural representation of space needed for
biological path integration. This paper presents a scheme to classify path
integration systems on the basis of the way the home vector records and
updates the spatial relationship between the animal and its home location.
Four extended classes of coordinate systems are used to unify and review both
canonical and neural network models of path integration, from the arthropod
and mammalian literature. This scheme demonstrates analytical equivalence
between models which may otherwise appear unrelated, and distinguishes between
models which may superficially appear similar. A thorough analysis is carried
out of the equational forms of important facets of path integration including
updating, steering, searching and systematic errors, using each of the four
coordinate systems. The type of available directional cue, namely allothetic
or idiothetic, is also considered. It is shown that on balance, the class of
home vectors which includes the geocentric Cartesian coordinate system,
appears to be the most robust for biological systems. A key conclusion is that
deducing computational structure from behavioural data alone will be difficult
or impossible, at least in the absence of an analysis of random errors.
Consequently it is likely that further theoretical insights into path
integration will require an in- depth study of the effect of noise on the four
classes of home vectors.
Reference
R J Vickerstaff, A Cheung (2009). Which coordinate
system for modelling path integration? Journal of Theoretical Biology 263
(2010) 242–261
PDF (619K)
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Fig 1. Four ways to represent the same spatial
relationship between animal and home. ‘A’ is the animal’s location. ‘H’ shows
the home location. Shown are HVs for each of the four ‘standard’ coordinate
systems considered in this paper:(a) geocentric Cartesian (GC), (b)
geocentric polar (GP), (c) egocentric Cartesian(EC), (d) egocentric polar
(EP).

Fig 2. Homing trajectory generated by the searching model
after an L-shaped outwards excursion.

Fig 3. Search density profile of a single search pattern
lasting for 106s.
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Hybrid robot control and
SLAM for persistent navigation and mapping
Michael Milford (a, b, c)
and Gordon Wyeth (a), (a) School of Engineering Systems, Queensland
University of Technology, (b) Queensland Brain Institute, The University
of Queensland, (c) School of Information Technology and Electrical
Engineering, The University of Queensland
ABSTRACT
For a mobile robot to operate autonomously in real-world
environments, it must have an effective control system and a navigation system
capable of providing robust localization, path planning and path execution. In
this paper we describe work investigating synergies between mapping and
control systems. We have integrated development of a control system for
navigating mobile robots and a robot SLAM system. The control system is hybrid
in nature and tightly coupled with the SLAM system; it uses a combination of
high and low level deliberative and reactive control processes to perform
obstacle avoidance, exploration, global navigation and recharging, and draws
upon the map learning and localization capabilities of the SLAM system. The
effectiveness of this hybrid, multi-level approach was evaluated in the
context of a delivery robot scenario. Over a period of two weeks the robot
performed 1143 delivery tasks to 11 different locations with only one delivery
failure (from which it recovered), travelled a total distance of more than 40
km, and recharged autonomously a total of 23 times. In this paper we describe
the combined control and SLAM system and discuss insights gained from its
successful application in a real-world context.
Reference
Robotics and Autonomous Systems Volume 58, Issue 9, 30
September 2010, Pages 1096-1104 Hybrid Control for Autonomous Systems
PDF (1780K)
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 Fig
1. Experience map for the environment.
 Fig
2. (a) The global temporal map and planned path, with the robot localized
partway along the path. (b) The local obstacle map obtained from laser range
scans (approximately corresponding to the shaded scan area in (a). (c) Local
obstacle avoidance and safe trajectory generation.
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Learning Spatial
concepts from RatSLAM Representations
Michael Milford, Ruth Schulz, David Prasser, Gordon Wyeth and Janet Wiles. The University of Queensland.
ABSTRACT
RatSLAM is a biologically-inspired visual SLAM and
navigation system that has been shown to be effective indoors and outdoors on
real robots. The spatial representation at the core of RatSLAM, the experience
map, forms in a distributed fashion as the robot learns the environment. The
activity in RatSLAM’s experience map possesses some geometric properties, but
still does not represent the world in a human readable form. A new system,
dubbed RatChat, has been introduced to enable meaningful communication with
the robot. The intention is to use the “language games” paradigm to build
spatial concepts that can be used as the basis for communication. This paper
describes the first step in the language game experiments, showing the
potential for meaningful categorization of the spatial representations in
RatSLAM.
Reference
Robotics and Autonomous Systems Volume 55, Issue 5, 31 May
2007, Pages 403-410 From Sensors to Human Spatial Concepts
PDF (927K)
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 Fig
1. Floor plan of the area used for the experiment and the approximate
trajectory of the robot.

Fig 2. Trajectory of the most highly activated pose cell
during the experiment.

Fig 3. The experience map. The map is continuous and has a
high degree of correspondence to the spatial arrangement of the environment
shown in Fig 1.
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Michael Milford and Gordon Wyeth, The University of Queensland
ABSTRACT
The challenge of persistent navigation and mapping is to
develop an autonomous robot system that can simultaneously localize, map and
navigate over the lifetime of the robot with little or no human intervention.
Most solutions to the simultaneous localization and mapping (SLAM) problem aim
to produce highly accurate maps of areas that are assumed to be static. In
contrast, solutions for persistent navigation and mapping must produce
reliable goal-directed navigation outcomes in an environment that is assumed
to be in constant flux. We investigate the persistent navigation and mapping
problem in the context of an autonomous robot that performs mock deliveries in
a working office environment over a two-week period. The solution was based on
the biologically inspired visual SLAM system, RatSLAM. RatSLAM performed SLAM
continuously while interacting with global and local navigation systems, and a
task selection module that selected between exploration, delivery, and
recharging modes. The robot performed 1,143 delivery tasks to 11 different
locations with only one delivery failure (from which it recovered), travelled
a total distance of more than 40 km over 37 hours of active operation, and
recharged autonomously a total of 23 times.
Published
Online: 21 July, 2009 as doi:10.1177/0278364909340592
Reference
M Milford, G Wyeth (2009). Persistent Navigation and
Mapping using a Biologically Inspired SLAM System. The International Journal
of Robotics Research OnlineFirst.
PDF (2,194K)
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Fig 1. Experience map pruning. Experiences are removed to
maintain a one experience per grid square density.

Fig 2. Vision hardware.

Fig 3. (a) A photo of the robot in the environment during
the experiments and (c)–(d) a schematic showing the local navigation process.
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Michael Milford and Gordon Wyeth, The University of Queensland
ABSTRACT
This paper describes a biologically inspired approach to
vision-only simultaneous localization and mapping (SLAM) on ground-based
platforms. The core SLAM system, dubbed RatSLAM, is based on computational
models of the rodent hippocampus, and is coupled with a lightweight vision
system that provides odometry and appearance information. RatSLAM builds a map
in an online manner, driving loop closure and relocalization through sequences
of familiar visual scenes. Visual ambiguity is managed by maintaining multiple
competing vehicle pose estimates, while cumulative errors in odometry are
corrected after loop closure by a map correction algorithm. We demonstrate the
mapping performance of the system on a 66 km car journey through a complex
suburban road network. Using only a web camera operating at 10 Hz, RatSLAM
generates a coherent map of the entire environment at real-time speed,
correctly closing more than 51 loops of up to 5 km in length. structure in
neuron ensemble activity.
Reference
M Milford, G Wyeth (2008). Mapping a Suburb With a Single
Camera Using a Biologically Inspired SLAM System. IEEE TRANSACTIONS ON
ROBOTICS, VOL. 24, NO. 5.
PDF (1902K)
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Fig 1. (a) Excitatory (arrows), inhibitory (round), and
self-motion connections for a continuous attractor network representation of
head direction cells. (b) A stable activity packet centered at 120◦.

Fig 3. Broad connectivity between functional regions in
the RatSLAM system.
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Michael
Milford and Gordon Wyeth,
The University of Queensland
ABSTRACT
Simultaneous Localization And Mapping (SLAM) is one of
the major challenges in mobile robotics. Probabilistic techniques using
high-end range finding devices are well established in the field, but recent
work has investigated vision only approaches. This paper presents a method for
generating approximate rotational and translation velocity information from a
single vehicle-mounted consumer camera, without the computationally expensive
process of tracking landmarks. The method is tested by employing it to provide
the odometric and visual information for the RatSLAM system while mapping a
complex suburban road network. RatSLAM generates a coherent map of the
environment during an 18 km long trip through suburban traffic at speeds of up
to 60 km/hr. This result demonstrates the potential of ground-based
vision-only SLAM using low cost sensing and computational hardware.
Reference
M Milford, G Wyeth (2008). Single Camera Vision-Only
SLAM on a Suburban Road Network, in proceedings of the IEEE international
Conference on Robotics and Automation, Pasadena, United States.
PDF (1535K)
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Fig 1. The original image
(a) is converted to greyscale (b), then cropped and converted into a column
intensity graph (c).
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The race to learn: Spike timing and STDP can coordinate learning and
recall in CA3
Christopher R. Nolan, Gordon Wyeth, Michael Milford, Janet Wiles. The University of Queensland, Australia
ABSTRACT
The CA3 region of the hippocampus has long been proposed as
an autoassociative network performing pattern completion on known inputs. The
dentate gyrus (DG) region is often proposed as a network performing the
complementary function of pattern separation. Neural models of pattern
completion and separation generally designate explicit learning phases to
encode new information and assume an ideal fixed threshold at which to stop
learning new patterns and begin recalling known patterns. Memory systems are
significantly more complex in practice, with the degree of memory recall
depending on context-specific goals. Here, we present our spike-timing
separation and completion (STSC) model of the entorhinal cortex (EC), DG, and
CA3 network, ascribing to each region a role similar to that in existing
models but adding a temporal dimension by using a spiking neural network.
Simulation results demonstrate that (a) spike-timing dependent plasticity in
the EC-CA3 synapses provides a pattern completion ability without recurrent
CA3 connections, (b) the race between activation of CA3 cells via EC-CA3
synapses and activation of the same cells via DG-CA3 synapses distinguishes
novel from known inputs, and (c) modulation of the EC-CA3 synapses adjusts
the learned versus test input similarity required to evoke a direct CA3
response prior to any DG activity, thereby adjusting the pattern completion
threshold. These mechanisms suggest that spike timing can arbitrate between
learning and recall based on the novelty of each individual input, ensuring
control of the learn-recall decision resides in the same subsystem as the
learned memories themselves. The proposed modulatory signal does not override
this decision but biases the system toward either learning or recall. The
model provides an explanation for empirical observations that a reduction in
novelty produces a corresponding reduction in the latency of responses in CA3
and CA1. © 2010 Wiley-Liss, Inc.
Reference
CR Nolan, G Wyeth, M Milford, J Wiles (2010) The race to
learn: Spike timing and STDP can coordinate learning and recall in CA3,
Hippocampus Vol(no):pages TBA.
Published Online: 15 Mar 2010
Full Text: PDF
(Size: 980K) Supporting Information
Local copy (early view)
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Fig 1. Pattern separation and completion.

Fig 2. How timing can signify the distinction between novel
and familiar inputs.

Fig 3. Network architecture showing main regions, cell
types, and the fan in-fan out

Fig 4. Modulation of the EC2-CA3 synapses affects the
balance between pattern separation and completion.
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A role for symmetric
head-angular-velocity cells: Tuning the head-direction network.
Peter
Stratton and Janet Wiles. The University of Queensland
ABSTRACT
All adaptive systems require calibration. Computational
models of the head direction (HD) system of the rat usually assume that the
connections that maintain HD neuron activity are pre-wired and static. Ongoing
activity in these models relies on precise attractor dynamics. It is currently
unknown how such connections could be so precisely wired, and how accurate
calibration is maintained in the face of ongoing noise and perturbation. A
model of the HD system that uses symmetric head-angular-velocity (HAV) cells
as a training signal shows that the HD system can learn to support stable
firing patterns from poorly-performing, unstable starting conditions. The
proposed calibration mechanism explains why symmetric HAV cells in the rat
outnumber their asymmetric counterparts. The mechanism also conjectures that
the efficacy of one synapse onto a postsynaptic cell can be controlled in part
by activity received by that same cell on another synapse. If its existence in
biological networks is confirmed, this mechanism will add significantly to our
understanding of synaptic plasticity.
Reference
Peter Stratton and Janet Wiles. A role for symmetric
head-angular-velocity cells: Tuning the head-direction network. Frontiers in
Systems Neuroscience, 2009 (COSYNE’09). (Abstract only)
PDF (270 K)
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Fig 1. HD network pre- and post-training. For both graphs,
50 activity packets were initiated in turn, spaced evenly around the
attractor; each curve tracks the position of one of those HD activity packets
over the next 1000 ms.
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Automatic
Calibration of a Spiking Head-Direction Network for Representing Robot
Orientation
Peter
Stratton*†, Michael Milford*†, Janet Wiles†, Gordon Wyeth† *Queensland Brain
Institute and †School of Information Technology and Electrical Engineering,
The University of Queensland
ABSTRACT
Calibration of movement tracking systems is a difficult
problem faced by both animals and robots. The ability to continuously
calibrate changing systems is essential for animals as they grow or are
injured, and highly desirable for robot control or mapping systems due to the
possibility of component wear, modification, damage and their deployment on
varied robotic platforms. In this paper we use inspiration from the animal
head direction tracking system to implement a self-calibrating, neurally-based
robot orientation tracking system. Using real robot data we demonstrate how
the system can remove tracking drift and learn to consistently track rotation
over a large range of velocities. The neural tracking system provides the
first steps towards a fully neural SLAM system with improved practical
applicability through self-tuning and adaptation.
Reference
Peter Stratton, Michael Milford, Janet Wiles and Gordon
Wyeth. Automatic Calibration of a Spiking Head-Direction Network for
Representing Robot Orientation. In Proceedings of the Australasian Conference
on Robotics and Automation, Sydney, Australia, 2009.
PDF (2,071
KB)
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Fig 1. The head direction network contains three classes of
cells and a range of excitatory and inhibitory connections.

Fig 2. For the arena experiments, a Pioneer 3DX robot was
placed in a 3 × 3 metre area with low walls in an environment that contained
many visual features.
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Peter Stratton and Janet Wiles, The University of Queensland
ABSTRACT
This study investigates the range of behaviors possible
in ensembles of spiking neurons and the effect of their connectivity on
ensemble dynamics utilizing a novel application of statistical measures and
visualization techniques. One thousand spiking neurons were simulated,
systematically varying the strength of excitation and inhibition, and the
traditional measures of spike distributions – spike count, ISI-CV, and Fano
factor – were compared. We also measured the kurtosis of the spike count
distributions. Visualizations of these measures across the parameter spaces
show a range of dynamic regimes, from simple uncorrelated spike trains (low
connectivity) through intermediate levels of structure through to seizure-like
activity. Like absolute spike counts, both ISI-CV and Fano factor were
maximized for different types of seizure states. By contrast, kurtosis was
maximized for intermediate regions, which from inspection of the spike raster
plots exhibit nested oscillations and fine temporal dynamics. Brain regions
exhibit nested oscillations during tasks that involve active attending,
sensory processing and memory retrieval. We therefore propose that kurtosis is
a useful addition to the statistical toolbox for identifying interesting
structure in neuron ensemble activity.
Reference
P Stratton, J Wiles (2008). Comparing Kurtosis Score to
Traditional Statistical Metrics for Characterizing the Structure in Neural
Ensemble Activity. In M. Marinaro et al., editors, Dynamic Brain – from
Neural Spikes to Behaviors, Springer LNCS V 5286, 2008, pp.115-122.
PDF (135K)
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Different measures of spike train characteristics

ISI-CV is the standard deviation of the interspike
interval.

Fano Factor is similar in shape and analysis to ISI-CV

The total number of spikes correlates with both Fano Factor
and ISI-CV.

The Kurtosis Score identifies those regions in parameter
space.
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Complex Spiking Models: A Role for
Diffuse Thalamic Projections in Complex Cortical Activity
Peter Stratton,
Janet Wiles
The University of Queensland, School of Information Technology and
Electrical Engineering, Queensland Brain Institute, Brisbane, Australia
ABSTRACT
Cortical activity exhibits complex, persistent
self-sustained dynamics, which is hypothesised to support the
brain’s sophisticated processing capabilities. Prior studies have
shown how complex activity can be sustained for some time in spiking
neural network models, but network activity in these models
resembled high firing rate seizure which would eventually fail,
leading to indefinite quiescence. We present a spiking network model
of cortex innervated by diffuse thalamic projections, called the
Complex Spiking Model (CSM). The model exhibits persistent,
self-sustained, non-periodic, complex dynamics at low firing rates.
Multiple network configurations were tested, systematically varying
diffuse excitation from the thalamus, strength of the local cortical
inhibition and excitation, neighbourhood diameters, synaptic
efficacies and synaptic current time constants. Complex activity in
all the network configurations depended strongly upon the strength
of the diffuse excitation from the thalamus. We propose that diffuse
thalamic projections to cortex facilitate complex cortical dynamics
and are likely to be an important factor in the support of cognitive
functions.
Reference
Peter Stratton and Janet Wiles. Complex Spiking Models: A
Role for Diffuse Thalamic Projections in Complex Cortical Activity. To appear
In Springer LNCS, 2010.
PDF (602K)
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Fig 1. The Complex Spiking Model (CSM) used for this
research (not all connections shown).

Fig 2. Typical dynamics of the CSM. Activation of assemblies
of neurons can be seen to correlate and decorrelate over time, indicating
complex activity.
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Self-sustained non-periodic activity in networks of spiking neurons: The
contribution of local and long-range connections and dynamic synapses
Peter Stratton,
Janet Wiles
The University of Queensland, School of Information Technology and
Electrical Engineering, Queensland Brain Institute, Brisbane, Australia
ABSTRACT
Cortical dynamics show self-sustained activity
which is complex and non-periodic. Assemblies of neurons show
transient coupling exhibiting both integration and segregation
without entering a seizure state. Models to date have demonstrated
these properties but have required external input to maintain
activity. Here we propose a spiking network model that incorporates
a novel combination of both local and long-range connectivity and
dynamic synapses (which we call the LLDS network) and we present
explorations of the network's micro and macro behaviour. At the
micro level, the LLDS network exhibits self-sustained activity which
is complex and non-periodic and shows transient coupling between
assemblies in different network regions. At the macro level, the
power spectrum of the derived EEG, calculated from the summed
membrane potentials, shows a power-law-like distribution similar to
that recorded from human EEG. We systematically explored parameter
combinations to map the variety of behavioural regimes and found
that network connectivity and synaptic mechanisms significantly
impact the dynamics. The complex sustained behaviour occupies a
transition region in parameter space between two types of
non-complex activity state, a synchronised high firing rate regime,
resembling seizure, for low connectivity, and repetitive activation
of a single network assembly for high connectivity. Networks without
synaptic dynamics show only transient complex behaviour. We conclude
that local and long-range connectivity and short-term synaptic
dynamics are together sufficient to support complex persistent
activity. The ability to craft such persistent dynamics in a spiking
network model creates new opportunities to study neural processing,
learning, injury and disease in nervous systems.
Reference
P Stratton, J Wiles (2010). Self-sustained non-periodic
activity in networks of spiking neurons: The contribution of local and
long-range connections and dynamic synapses. NeuroImage Volume 52, Issue 3,
September 2010, Pages 1070-1079 Computational Models of the Brain.
PDF
(1,934K)
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Fig. 1. Network dynamics as a function of local and
long-range connectivity: a region of complex persistent activity is bounded by
regions of low complexity dynamics as the local and long-range connectivity is
varied.

Fig. 2. Micro dynamics of network activity shows
non-periodic complex behaviour.
 Fig. 3. Power spectrum of the derived EEG of network
activity shows close similarities to that recorded from humans.
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Spike-time robotics: a rapid response
circuit for a robot that seeks temporally varying stimuli.
Janet Wiles, David Ball, Scott Heath,
Chris Nolan and Peter Stratton
The
University of Queensland,
Brisbane, Australia
ABSTRACT
In this paper we describe a spiking neural
circuit inspired by the pyramidal-interneuron network gamma (PING)
circuit modeled by Whittington and colleagues [Whittington, M.A.,
Traub, R.D., Kopell, N., Ermentrout, B., Buhl, E.H.:
Inhibition-based rhythms: experimental and mathematical observations
on network dynamics. International Journal of Psychophysiology 38
(2000) 315-336]. The spiking network controls a rat animat – a
rodent-inspired robot that can autonomously explore and map its
environment. We demonstrate how the neural controller directs the
rat animat’s movement towards temporal stimuli of the appropriate
frequency using an approach based on Braitenberg Vehicles. The
circuit responds robustly (after four cycles) when first detecting a
light pulsing at 1 Hz, and rapidly (after one-to-three cycles) when
primed by recent experiences with the same frequency. This study is
the first to demonstrate a biologically-inspired spike-based robot
that is both robust and rapid in detecting and responding to
temporal dynamics in the environment. It provides the basis for
further studies of biologically-inspired spike-based robotics.
Reference
Janet Wiles, David Ball, Scott Heath, Chris Nolan and Peter
Stratton. Spike-time robotics: a rapid response circuit for a robot that seeks
temporally varying stimuli. To appear in Australian Journal of Intelligent
Information Processing Systems, 2010.
PDF (718K)
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Fig 1. The rat animat and temporal dynamics of its visual
environment. The rat animat, top left, moves autonomously though its office
environment (typical camera view, top right). The average ambient light levels
were recorded while the rat animat rotated 360 deg (bottom, green trace). With
high gain the signal derivative shows fast oscillations (blue trace).
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Inhibition Dominates the Early Phase of Up-States in the Basolateral Amygdala
Francois Windels,1* James W. Crane,2* and Pankaj Sah1 1Queensland
Brain Institute, The University of Queensland, Brisbane, Queensland;
and 2School of Biomedical Sciences, Charles Sturt University,
Bathurst, New South Wales, Australia
ABSTRACT
Slow oscillations (1 Hz) in neural activity
occur during sleep and quiet wakefulness in both animals and humans.
Single-cell recordings in cortical neurons have shown that these
oscillations are driven by a combination of excitatory and
inhibitory synaptic inputs. During up-states, although the ratio
between them varies between cells, excitation and inhibition follow
similar time courses. Neurons in the basolateral amygdala (BLA) also
show slow oscillations between the resting membrane potential
(down-state) and depolarized potentials (upstates). Delivery of
footshock during the down-state fully reproduces up-states in these
cells. Here we report that up-states in BLA principal neurons
up-states begin with an excitatory drive that is rapidly (within 50
ms) overwhelmed by inhibitory input. This excess of inhibitory drive
is short lasting (300–400 ms), after which up-states are maintained
by a tight balance between excitation and inhibition. This initial
large inhibitory input restricts action potential generation and
reduces the firing frequency of these cells. These results indicate
that, in contrast to cortical neurons, up-states in BLA neurons show
an initial period of strong cortically driven feed-forward
inhibition. For the remainder of the up-state, feedback inhibition
then acts to balance excitatory input.
Reference
Inhibition dominates the early phase of up-states in the
basolateral amygdala. J Neurophysiol 104: 3433–3438, 2010. First published
October 20, 2010; doi:10.1152/jn.00531.2010.
PDF (1341K)
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Fig 1. Inhibition is dominant in the early part of the up-state in the
basolateral amygdala. A: mean (n = 7 cells) excitatory (Ge) and
inhibitory (Gi) drive calculated as conductance change from
recordings at 50 (Ge) and +20 mV (Gi) (n = 7) during
footshock-induced up-states.
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Spatial Cognition for Robots: Robot Navigation from Biological Inspiration
Gordon Wyeth and Michael
Milford.
The
University of Queensland.
ABSTRACT
The paper discusses robot navigation from
biological inspiration. The authors sought to build a model of the
rodent brain that is suitable for practical robot navigation. The
core model, dubbed RatSLAM, has been demonstrated to have exactly
the same advantages described earlier: it can build, maintain, and
use maps simultaneously over extended periods of time and can
construct maps of large and complex areas from very weak geometric
information. The work contrasts with other efforts to embody models
of rat brains in robots. The article describes the key elements of
the known biology of the rat brain in relation to navigation and how
the RatSLAM model captures the ideas from biology in a fashion
suitable for implementation on a robotic platform. The paper then
outline RatSLAM's performance in two difficult robot navigation
challenges, demonstrating how a cognitive robotics approach to
navigation can produce results that rival other state of the art
approaches in robotics.
Reference
Robotics & Automation Magazine, September 2009 Volume: 16
Issue:3 On pages: 24 - 32 Date of Current Version: 09 September 2009
Sponsored by: IEEE Robotics and Automation Society
PDF (3948K)
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Fig 1. Connectivity of the brain regions containing various spatial encoding
cell types.

Fig 2. Robot in the indoor test environment.
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